Genetic
Services in the KP Southern California Region: Delivering the Promises
of Tomorrow Today |
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By
Mónica
Alvarado, MS; Nancy Shinno, MD; C Douglas Monroe, MS, RPh
Mehdi Jamehdor, MD, FACMG; Kermit Anderson, MA
Abstract
The
impact of advances in molecular biology over the past 25 years--especially
the completion of the Human Genome Project--touches every branch
of medicine and will continue to have profound influence on medical
practice. Advances in genetic technology are changing the traditional
patient/doctor paradigm. For some medical conditions, current
genetic technology and predictive testing enable us to offer medical
management before a patient is diagnosed with a disorder.
However, advances in genetic technology impose on all clinicians
the added requirement of identifying patients who may benefit
from having access to this technology. Kaiser Permanente (KP)
provides a unique, integrated approach to this challenge by serving
as a model for delivery of genetic services. This article outlines
the history and current status of genetic services provided in
the KP Southern California Region and summarizes current and future
developments in medical genetics technology.
Dawn of
a New Era
The
integral role of genetics in everyday medical practice is the result
of more than five decades of revolutionary clinical and molecular
research. The impact of advances in molecular biology over the past
25 years--especially the completion of the Human Genome Project1--touches
every branch of medicine and will continue to profoundly influence
medical practice. Application of genomics to the study of responses
to pharmaceuticals is opening new opportunities in drug development
and in pharmacogenetic tools for lowering risks of drug therapy
and for increasing its benefits. While genetic technology continues
to evolve, however, clinicians face the daunting task of integrating
emerging technologies into daily medical practice to improve the
health and welfare of patients. As medical genetics gained unparalleled
prominence in the 1990s, Kaiser Permanente (KP) has enhanced its
unique system of integrated health care services by becoming a national
leader in delivering cutting-edge genetic services to KP members.
This article outlines the history and current status of genetic
services available in the KP Southern California Region (KPSC) and
summarizes current and future developments in medical genetics technology.
From Humble
Beginnings to State-of-the-Art Practice
Clinical
geneticist Nancy Shinno, MD--who is now KPSC Chief of Regional Genetic
Services--started her KP career in 1978 as one of only four KPSC
clinical geneticists. In those early years, KP geneticists divided
their time between medical genetics practice and pediatrics. Moreover,
the practice of genetics primarily consisted of evaluating children
with dysmorphic features and developmental delay and counseling
women about the risks of advanced maternal age. Other than cytogenetic
analysis performed to determine chromosome abnormality, few options
existed for prenatal diagnosis of genetic disorders.
Now
Dr Shinno leads the KPSC Regional Genetics Department, which includes
8 full-time medical geneticists, 22 genetic counselors, a regional
genetic screening program, and a regional metabolic genetics program.
The KPSC Genetics Department provides genetic services to KP members
at every KPSC medical center. The "menu" of available
genetic tests has expanded exponentially, and the practice of genetics
has grown beyond the realm of prenatal and pediatric genetics to
include cancer genetics and neurogenetics, among other areas (see
Tables 1 and 2). KPSC geneticists and genetic counselors also participate
in programs where genetic disorders are managed by other specialists,
such as those practicing in the craniofacial service, the sickle-cell
disease center, and clinics that evaluate patients for neuromuscular
or neurodegenerative disorders.
The
impact of genetic technology on diagnosis and management of genetic
disorders over time is clearly illustrated by treatment of Fabry
disease, an X-linked recessive storage disorder first described
in 1898. The disorder causes painful, disabling crises in boys as
young as ten years of age; progressive damage to the kidneys, heart,
and central nervous system, among other organs; and generally results
in renal failure that can lead to early death in men in their thirties
and forties.2 Fabry disease is caused by mutation in
the alpha galactosidase A (GAL) gene.2 This genetic mutation
causes deficient activity of the alpha galactosidase enzyme. This
deficiency results in progressive accumulation of glycosphingolipids,
especially in vascular endothelium, leading to ischemia and infarction
of small vessels and resultant renal, cardiac, and cerebrovascular
dysfunctions.
In
1978, when Dr Shinno counseled a young woman whose brother and a
maternal uncle had Fabry disease, doctors could offer such women
little other than the information that they had a 50% chance of
being a carrier of the condition. At that time, Fabry disease could
be diagnosed in the woman's brother by using enzyme analysis of
leukocytes to identify alpha galactosidase deficiency, but this
diagnostic test could not reliably diagnose the carrier state. Prenatal
diagnosis using enzyme analysis could be used to detect an affected
male fetus, but no treatment (other than kidney transplantation)
was available for any affected sons the woman might bear.
By
the early 1990s, scientists had mapped the gene for Fabry disease,
and DNA analysis was available to inform women whether or not they
were carriers of the disease. If results of DNA analysis were negative,
the woman had no need to worry about bearing sons destined to have
the disorder; if results of the test were positive, the woman could
have prenatal diagnosis using sequence analysis, which could detect
nearly 100% of mutations in the GAL gene.2
By
2003, medical geneticists could inform a carrier patient that enzyme
replacement therapy (a drug spinoff from identifying the gene) was
available for her affected sons to help prevent renal failure, cardiac
and cerebrovascular sequelae, and pain.
At
KP, careful evaluation and selection of patients has helped to maximize
the benefits provided by agalsidase beta (Fabrazyme, Genzyme Therapeutics,
Cambridge, MA) a new recombinant enzyme treatment for Fabry disease.
Treatment of at least one patient via compassionate protocol began
nearly two years before marketing of Fabrazyme. Fabrazyme infusion
therapy became available in KPSC in 2003, soon after the drug was
approved by the US Food and Drug Administration (FDA). Infusion
treatment is currently administered at the Metabolic Genetics Service
at the KP Los Angeles Medical Center--KPSC's state-of-the-art center
for diagnosis and management of metabolic disorders--under the direction
of Rebecca Mardach-Verdon, MD. Infusion therapy is available also
at the KP Bakersfield and San Diego Medical Centers. Now, more than
two years after FDA approval of the drug, several patients are being
treated with this enzyme replacement therapy, and reports have described
reduction or elimination of neuropathic pain, retardation of cardiac
involvement, and improved ability to resume work and social activity.
A KP
multidisciplinary Fabry Disease Advisory Panel including experts
from the genetics, cardiology, neurology, nephrology, ophthalmology,
and gastroenterology departments meets regularly to discuss and
create management guidelines and to review nonclassic cases of Fabry
disease. Treatment of this disease illustrates the potential for
treatments derived from expanded knowledge about the genetic basis
for disease and developed through new technology for pharmaceutical
development. Indeed, the story of Fabry disease illustrates how
advances in genetic technology have transformed management of this
condition from simply offering information (ie, about risk of disease
recurrence) to accurate diagnosis and carrier testing and, finally,
to use of enzyme replacement to treat and prevent complications.
Genetic
Testing, Screening, and Counseling
Genetic
testing analyzes human DNA, RNA, genes, chromosomes, or a combination
of these structures to detect heritable or acquired genotypes, mutations,
phenotypes, or karyotypes that can cause a specific disease or condition.
Genetic testing also analyzes human proteins and certain metabolites,
which are predominantly used to detect heritable or acquired genotypes,
mutations, or phenotypes. Many different types of genetic tests
are currently available (see Table 3).
Most
genetic testing in KPSC is conducted at our state-of-the-art Regional
Genetic Testing Laboratory. During the past year, the laboratory
conducted more than 12,000 cytogenetic tests, 14,000 molecular tests,
and more than 20,000 biochemical tests. In addition, each year the
laboratory conducts revenue-generating tests, including approximately
56,000 maternal serum alpha-fetoprotein (AFP) tests reimbursed by
the California Expanded AFP Screening Program. The biochemical genetics
section of the laboratory also provides services (eg, analysis of
amino acids, organic acids, tandem mass spectrometry) to other KP
Regions, including Northern California and Hawaii. Since 1991, the
number of cancer cytogenetic tests performed at the KPSC Regional
Genetic Testing Laboratory has increased by more than 500%, the
number of fluorescent in situ hybridization (FISH) procedures has
increased by nearly 2000%, and the number of cytogenetic studies
of prenatal specimens has remained fairly consistent. Moreover,
during the past five years, the Regional Genetic Testing Laboratory
has seen a dramatic decrease in the number of molecular tests sent
to outside laboratories while the number of inhouse DNA tests has
increased even more dramatically (Figures 1 and 2).
Genetic
tests are often more complex than other types of medical tests.
Testing for genetic susceptibility to disease (eg, examination of
breast cancer susceptibility genes BRCA1 and BRCA2) is inherently
complex because of its probabilistic and familial nature. Tests
of this type identify empirical risks on the basis of genetic linkage
studies of populations, not studies of risk in individual persons.
This type of population testing has social and ethical consequences
that extend beyond medical management and reveals information that
affects not only the patient but also the patient's blood relatives.
For this reason, genetic counseling is always an integral
part of genetic testing. At KPSC, an outstanding team of 22 genetic
counselors work alongside SCPMG medical geneticists to provide pedigree
collection and risk assessment; education about genetic diseases
and genetic testing options; discussion of options for disease management,
treatment, and surveillance; psychosocial support; and case management.
The
KPSC Genetic Screening Program administers the California Expanded
AFP Screening Program as well as the Regional Cystic Fibrosis (CF)
Program and the Newborn Screening Program. In California, all pregnant
women are offered prenatal "multiple marker screening"
through the California Expanded AFP Program. The current panel reports
a detection rate of 70% for Down syndrome and detection rates ranging
from 85% to 97% for neural tube defects (depending on the type of
neural tube defect). "Quad" screening, which adds another
analyte to the assay, is under development and is expected to substantially
improve prenatal detection rates for Down syndrome over the current
"triple screen." Prenatal CF carrier screening is offered
to women on the basis of their ethnicity or on request. KP members
who receive positive test results are immediately referred for genetic
counseling to help them understand their risks, evaluate their options
for additional testing, and make informed medical and personal decisions
about having additional genetic tests.
KPSC
also participates in the California Newborn Screening Program,4
which has for many years been screening newborns for phenylketonuria
(PKU), sickle-cell anemia, congenital hypothyroidism, and galactosemia.
Since its inception, the program has screened virtually all babies
born to KPSC members. The program was expanded in 2005 to screen
for more than 40 additional disorders through use of tandem mass
spectrometry. Among the disorders detected by this method are medium-chain-acyl
CoA dehydrogenase (MCAD) deficiency and glutaric acidemia type I
(GA1).
Cancer Genetics
For
decades, physicians have been able to identify families that have
clearly hereditary patterns of cancer; however, physicians had little
to offer these families other than recommending vigilance toward
all family members without knowing who was (or was not) at risk.
That situation changed in the past decade, thanks to the discovery
and mapping of several genes associated with susceptibility to cancer.
Commercial testing for familial adenomatous polyposis (FAP, the
most thoroughly characterized hereditary form of colorectal cancer)
was first made available in 1995 and was closely followed by testing
for BRCA1 and BRCA2 (breast cancer susceptibility genes 1 and 2)--testing
which first became available in 1996--and testing for hereditary
nonpolyposis colorectal cancer (HNPCC). Opportunities for commercial
and research testing for other cancer syndromes continue to evolve
(see Table 4). KP has always been a leader in the area of cancer
genetics and was one of the first healthcare organizations in the
nation to address the issues related to BRCA1/BRCA2 testing. In
1997, the National KP Guidelines for BRCA Counseling and Testing5
were among the first such guidelines developed in the United States.
Geneticists and genetic counselors from KPSC were key contributors
to development of that guideline, and today these professionals
continue to provide comprehensive risk assessment, genetic testing
and interpretation, and management information to patients who are
at risk for hereditary cancer susceptibility, as well as to their
families.

Diagnosis and management of FAP are excellent examples of how genetic
technology has substantially changed the way that hereditary cancer
susceptibility is diagnosed and treated today. FAP is an autosomal
dominant condition which affects approximately 1 in 5000 persons
and is characterized by development of numerous (often more than
1000) colon adenomas; virtually all affected patients are at risk
for having colorectal cancer by age 40 years. Before 1995, diagnosis
of FAP was based on family history of either polyposis, early colon
cancer, or both, and sometimes based on presence of extracolonic
characteristics (eg, congenital hyperpigmentation of retinal epithelium).
Because of the early manifestations of the disorder, all children
of affected parents were scheduled for annual endoscopic examination
beginning around ten years of age.6 Because each child
had a 50% chance of being affected, half of the children receiving
endoscopy had the procedure unnecessarily. After genetic testing
became available and the family mutation could be identified, children
at risk could be tested; and only those carrying the family mutation
would need to be screened for colon cancer. This genetic testing
technology thus spares unaffected children from being tested and
allows families and the healthcare systems to focus their resources
where they are most needed. Thanks to recent developments in molecular
diagnostics, the rate of detecting the mutations in FAP families
has increased from about 80% (in the 1990s) to 90% today.7

Figure
1. Graph shows number of samples sent
by KPSC Regional Genetics Testing Laboratory
for DNA testing outside KP during years 1991
through 2005. Graph produced by Michael Bucher,
and used with permission.

Figure 2. Number of inhouse DNA tests done at
KPSC Regional Genetics Testing Laboratory
during years 2000 through 2005. Graph produced
by Michael Bucher, and used with permission.
The Vision
of Pharmacogenetics and Pharmacogenomics: The Right Drug for the
Right Patient
Pharmacogenetics
is the study of variations in DNA sequence related to drug action
and disposition and includes study of the enzymes involved in drug
metabolism as well as the transporters involved in the absorption,
distribution, and excretion of drugs. Pharmacogenomics is the study
of all genes that affect the body's response to drugs; pharmacogenomics
is thus the intersection of pharmacology and genomics. Although
the terms pharmacogenomics and pharmacogenetics are
often used interchangeably, pharmacogenomics is a broader term because
it applies to all genes.
Pharmacotherapy
for Heritable Disorders
Recombinant
versions of enzymes have been developed for treating several heritable
disorders of lysosomal storage. Enzyme replacement therapy is available
for patients with Gaucher disease, Fabry disease, and some forms
of mucopolysaccharidosis (MPS). Other forms of enzyme replacement
therapy may soon be approved for treating Pompe disease and another
type of MPS (see Table 5).
Throughout
California, semiannual collaborative videoconferences have been
held by KP geneticists and other specialists (eg, cardiologists,
neurologists, nephrologists, ophthalmologists, and gastroenterologists)
who treat these patients. Videoconference participants review the
newer enzyme replacement products as well as issues surrounding
therapy. This interactive approach provides an optimum perspective
on complex diseases, enables sharing of information, and helps clinicians
who are making treatment decisions regarding enzyme replacement
therapy.

The Promise
of Personalized Medicine
News
articles have heralded the approach of personalized medicine, a
vision of the future wherein type and dose of medication will be
chosen on the basis of each patient's own genetic profile as determined
by pharmacogenetic pretesting. This envisioned future will probably
occur in small steps, because testing is not yet widely available
for most genetic variants and because outcome data must first be
collected to guide prescription adjustments based on pretesting.
This futuristic model of personalized medicine must also account
for multiple factors that can affect gene expression.
Pharmacogenetic
information has already been added to the FDA-approved labeling
of some medications. Many others will follow, adding new facets
to treatment decisions in individual cases. In addition, pharmacogenomic
analysis conducted during the drug development process will result
in more accurately targeted drugs with more limited toxicity. This
achievement may bring new therapies to the consumer market, because
improved efficacy and lessened toxicity could justify FDA approval
of drugs which could not have been approved for less-well-defined
target populations.
During
the past five decades, research has led to considerable increase
in knowledge concerning the metabolizing enzymes affected by polymorphisms
of single genes. Examples of these enzymes include:
-
N-acetyltransferase (NAT2), related to alterations in pharmacokinetics
of isoniazid, hydralazine, procainamide, and sulfonamides
-
cytochrome-P450 isoenzymes, such as CYP2D6, CYP2C19, and CYP2C9,
which affect metabolism of many drugs
-
UDP-glucuronosyl transferases (UDP-GT), which has an isoform (UGT1A1)
that converts the active metabolite of irinotecan to an inactive
glucuronide.
Patients
with one of these polymorphisms may be at increased risk for adverse
reactions or for inefficacy of the substrate drugs when these drugs
are used at usual doses.
With
new pharmacogenetic applications and expanded information about
associations between drug therapy and genetic variations, the challenge
presented to KP includes the need for careful, evidence-based evaluation
regarding use of pharmacogenetic testing in drug therapy. This evaluation
will require the coordinated efforts of physicians, clinical laboratory
staff, and pharmacy staff. In most instances, we will find value
in development of evidence-based guidelines, educational tools,
and internal KP review by the Biotechnology and Emerging Pharmaceutical
Technology Assessment Committee (BEPTAC), physician committees,
and the Pharmacy and Therapeutics Committee.
Genetic
Testing and Drug Therapy
At
least two types of genetic testing will be used in pharmacogenetic
applications that affect choice of drug therapy.
One
such type of testing measures genetic variation in a disease, such
as mutations in tumor tissue. One of the best-known examples of
gene testing related to drug therapy is testing of tumor tissue
in metastatic breast cancer patients as a determinant of whether
trastuzumab (Herceptin, Genentech, South San Francisco, CA) might
be effective. Overexpression of the HER2 protein has been found
in some human primary tumors and has been identified in 25% to 30%
of patients with breast cancer. Available methods of testing include
an immunohistochemical (IHC) assay to test for overexpression of
HER2 protein and a FISH test using a DNA probe to determine HER2
gene amplification. Testing has become both a standard feature of
treatment plans and requisite for use of trastuzumab in a specified
subset of patients diagnosed with metastatic breast cancer.
The
other type of genetic testing is testing for genetic variations
in an individual person. An example of such variation is the gene
variant for UGT1A1 enzyme, which converts the active metabolite
of irinotecan (Camptosar; Pharmacia, Peapak, NJ), indicated for
metastatic colorectal carcinoma) to an inactive metabolite. This
polymorphism (UGT1A1*28) leads to decrease in UGT1A1 enzyme activity,
which in turn leads to increased irinotecan toxicity (eg, severe
neutropenia). About 10% of North Americans are homozygous for the
polymorphism and are at increased risk for this toxicity. Another
40% of the North American population are heterozygotes and may also
have some increased risk for toxicity. The FDA has recently added
this information to the irinotecan product label.8 Oncologists,
pharmacists, laboratory personnel, and geneticists are interacting
to determine how to use this pharmacogenetic information most effectively.
The Family
Medical History: A Timeless Tool
Although
genetic technology continues to evolve at an unprecedented pace,
the family medical history remains a valuable clinical tool in delivery
of genetic services to our patients. Indeed, one forecast has stated
that "Personal and family [medical] history will continue to
be the key indicator for clinical use of genetic tests."9:p7
Collection and interpretation of information on family medical history
is essential for several purposes: to identify persons at risk for
genetic conditions, to determine genetic testing options, to interpret
results of genetic tests, and to choose appropriate options for
clinical case management. The FAP example presented above is a perfect
illustration of how knowing a patient's family medical history affects
diagnosis and management of a genetic condition.
Physicians
in all specialties will face increasing demands "to explore
family [medical] history, explain genetic testing options, and separate
genetic hype from reality for their patients--roles for which physicians
currently receive little or no training."10:p10
Recently, several professional organizations have focused on increasing
genetic competency among primary care practitioners. The National
Coalition for Health Professional Education in Genetics (NCHPEG)
has defined core competencies in genetics for all health professionals
and has developed education tools to promote integration of genetics
into healthcare practice.11 The American Academy of Family
Physicians chose genomics as their Annual Clinical Focus (ACF) for
2005 and invited Francis Collins, MD, Director of the Human Genome
Project, to kick off the program; and the CDC declared Thanksgiving
2004 as "Family History Day" to launch its Family History
Initiative.12
The
family medical history should include information on at least three
generations from both sides of the family (see Table 6). Physicians
must recognize that family history is dynamic. As relatives age,
they may be diagnosed with new disorders that were not part of the
original history collected for the patient. For data on family medical
history to be accurate, it must be updated regularly. Collecting
and updating information on family medical history should not be
the sole responsibility of primary care practitioners, however.
Because some KP members rarely see a primary care practitioner,
all clinicians should seize the opportunity to collect and update
information about their patients' family medical history.
KP
HealthConnect will provide an opportunity for collecting and tracking
some data on family medical history. Moreover, a KP interregional
committee of genetics specialists is currently exploring options
for developing expanded databases of family medical history and
pedigree. We hope that these initiatives will allow family history
interpretation software to become widely available to assist primary
care practitioners in identifying patients at risk for genetic conditions
and to improve clinical care of these patients. Until those tools
are universally available, clinicians should familiarize themselves
with some of the more common "clues" that suggest the
need for a referral to the genetics service (Table 7).
Present
and Future Evaluation of Genetic Technology at KPSC
The
KPSC Regional Genetics Department works closely with many other
departments and processes to ensure that the following occur:
-
Decisions regarding introduction of new genetics technology are
evidence-based
- All
aspects of service quality and cost are considered during the
planning and implementation process
-
An ongoing management structure for existing technologies is provided.
Groups who interact with the KPSC Regional Genetics Department
include National KP and KPSC Medical Technology Assessment and
Deployment Committees, the Biotechnology and Emerging Pharmaceutical
Technology Assessment Committee, the Regional Laboratory, and
the Research and Evaluation Department.
Advances
in genetic technology are changing the traditional patient-doctor
paradigm. Because of current genetic technology and predictive testing,
medical management is now available for some conditions before
they are diagnosed in a patient, and diagnosis is possible for many
conditions for which no effective treatment currently exists. In
both situations, genetic counseling of patients is imperative for
helping them and their families to understand this complex information.
In the future, evolving genetic technology will allow physicians
to manage their cases on the basis of each patient's individual
genetic makeup, the disorders to which these patients are predisposed,
and how these patients respond to treatment.
The
impressive power of genetic technology brings with it an equally
impressive three-part responsibility: equitable access, clinically
responsible care, and timely use of genetic technology for patients
who may benefit from it. Collecting, documenting, and acting on
information about each patient's family medical history are key
factors in this equation. The physicians and counselors at the KPSC
Regional Genetics Department are already delivering on the promises
of genetic technology and will continue to combine powerful, state-of-the-art
medicine with a personal touch and with the same excellence that
exemplifies genetic services in each KP region.
Glossary
- Genetics
is the study of single genes and their effects.
- Genetic
Medicine includes the diagnosis and treatment of conditions
caused by mutations in a single gene (eg, Huntington disease)
or chromosomal abnormality (eg, Down syndrome). Genetic counseling,
genetic testing, and genetic-disease management are services that
have been associated with genetic medicine practice.
- Clinical
geneticists are Board-certified or Board-eligible physicians
who have completed a fellowship approved by the American Board
of Medical Genetics. The American Board of Medical Genetics, recognized
by the American Board of Medical Specialties in 1991, certifies
physicians in clinical genetics along with physicians and PhDs
in clinical biochemical genetics, clinical cytogenetics, and clinical
molecular genetics. In the past, clinical geneticists were interested
primarily in dysmorphology and evaluation of children with birth
defects, mental retardation, or both. Although this interest continues
to be a part of their practice, clinical geneticists now engage
in a wide range of clinical endeavors involving patients of all
ages.
- Genetic
Counselors are medical professionals trained in all areas
of medical genetics who have completed a master's degree program
accredited by the American Board of Genetic Counseling and who
are Board-certified or Board-eligible. In addition to collecting
and interpreting information of a patient's family history, genetic
counselors educate and counsel patients about genetic disorders,
inheritance patterns, genetic testing options, interpretation
of test results, and the medical and social implications of genetic
disorders. Genetic counselors work under the supervision of, and
in collaboration with, clinical geneticists. Genetic counselors
provide preconception and prenatal genetic counseling to determine
family history of birth defects or inherited conditions, possible
teratogenic exposure, consanguinity, suspected personal or family
history of cancer susceptibility, and other conditions.
- Genomics
is the study of the whole genome--how individual genes interact
with each other and how they may interact with the environment
to spur development of disease. When genomics is fully developed
as a field, genetics will be a subset of genomics, and genetic
medicine will be part of the prevention, diagnosis, and treatment
of all disease, not just genetic disorders.13
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-
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